NWChem¶
简介¶
NWChem provides many methods for computing the properties of molecular and periodic systems using standard quantum mechanical descriptions of the electronic wavefunction or density. Its classical molecular dynamics capabilities provide for the simulation of macromolecules and solutions, including the computation of free energies using a variety of force fields. These approaches may be combined to perform mixed quantum-mechanics and molecular-mechanics simulations.
NWChem software can handle:
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可用的版本¶
版本 |
平台 |
构建方式 |
模块名 |
---|---|---|---|
6.8.1 |
Spack |
nwchem/6.8.1-intel-19.0.4-impi |
算例下载¶
wget https://nwchemgit.github.io/c240_631gs.nw
编辑文件,删除 第6行的 scratch_dir /scratch
运行示例¶
#!/bin/bash
#SBATCH --job-name=nwchem
#SBATCH --partition=small
#SBATCH --output=%j.out
#SBATCH --error=%j.err
#SBATCH -N 1
#SBATCH --ntasks-per-node=10
ulimit -l unlimited
ulimit -s unlimited
module load intel/19.0.4
module load nwchem/6.8.1-intel-19.0.4-impi
mpirun -np $SLURM_NTASKS nwchem c240_631gs.nw > c240_631gs.out
警告
软件运行需要库环境,加载时会自动创建 ~/.nwchemrc
文件。
使用如下脚本提交作业
sbatch test.slurm
运行结果见 c240_631gs.out
运行时间¶
π2.0
nwchem/6.8.1-intel-19.0.4-impi |
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---|---|---|
核数 |
10 |
20 |
CPU_time |
1h50m37s |
54m44s |